C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ski sarcoma viral oncogene homolog (avian)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030917 Ski-001 ENSMUSG00000029050 10090 - 4:155154075-155222592 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030917
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030917 20.562±8.20 24.796±1.77 24.234±2.93 12.657±6.29 23.065±10.59 17.014±6.71 6.586±1.99 12.451±3.60 3.730±1.37 36.455±5.67 3.455±1.48 32.223±6.37 6.166±4.24 1.898±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0002 VISTA 4:154934679-155536167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001843 IMP neural tube closure
GO:0002089 IMP lens morphogenesis in camera-type eye
GO:0003682 IGI chromatin binding
GO:0003714 IEA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0005737 IDA cytoplasm
GO:0005813 IEA centrosome
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0009948 IMP anterior/posterior axis specification
GO:0010626 IEA negative regulation of Schwann cell proliferation
GO:0014902 IDA myotube differentiation
GO:0016604 IEA nuclear body
GO:0016605 IEA PML body
GO:0017053 IDA transcriptional repressor complex
GO:0019901 IEA protein kinase binding
GO:0019904 IEA protein domain specific binding
GO:0021772 IMP olfactory bulb development
GO:0022011 IMP myelination in peripheral nervous system
GO:0030326 IMP embryonic limb morphogenesis
GO:0030512 IGI negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 IGI negative regulation of BMP signaling pathway
GO:0031064 IGI negative regulation of histone deacetylation
GO:0031625 IEA ubiquitin protein ligase binding
GO:0032926 IEA negative regulation of activin receptor signaling pathway
GO:0035019 IDA somatic stem cell maintenance
GO:0042981 IBA regulation of apoptotic process
GO:0043010 IMP camera-type eye development
GO:0043234 ISO protein complex
GO:0043388 IEA positive regulation of DNA binding
GO:0043585 IMP nose morphogenesis
GO:0045668 IEA negative regulation of osteoblast differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046332 IBA SMAD binding
GO:0046811 IGI histone deacetylase inhibitor activity
GO:0048147 IMP negative regulation of fibroblast proliferation
GO:0048593 IMP camera-type eye morphogenesis
GO:0048741 IMP skeletal muscle fiber development
GO:0060021 IMP palate development
GO:0060041 IMP retina development in camera-type eye
GO:0060325 IMP face morphogenesis
GO:0060349 IMP bone morphogenesis
GO:0060395 IEA SMAD protein signal transduction
GO:0070207 IEA protein homotrimerization
GO:0070491 IEA repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000100667 skia-001 protein_coding Danio_rerio 0 560
ENST00000378536 SKI-001 protein_coding Homo_sapiens 0 3282
ENST00000507179 SKI-005 retained_intron Homo_sapiens 0 322

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