C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PARK2 co-regulated-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030968 Pacrgl-201 ENSMUSG00000029089 10090 + 5:48372392-48388756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030968
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030968 1.996±1.02 1.685±0.30 4.172±0.42 2.251±1.47 1.294±0.68 1.376±0.20 0.885±0.29 1.660±0.61 2.591±1.61 1.546±0.54 0.650±0.34 2.540±1.08 2.787±1.48 13.107±6.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OO CIL_0002OO_0002 CGP 5:47983155-48388756
CIL_0002ON CIL_0002ON_0002 CGP 5:48372392-49524904

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295290 PACRGL-005 protein_coding Homo_sapiens 0 628
ENST00000360916 PACRGL-001 protein_coding Homo_sapiens 0 628
ENST00000467997 PACRGL-003 nonsense_mediated_decay Homo_sapiens 0 628
ENST00000471979 PACRGL-002 nonsense_mediated_decay Homo_sapiens 0 769
ENST00000503585 PACRGL-007 protein_coding Homo_sapiens 0 769
ENST00000506457 PACRGL-039 protein_coding Homo_sapiens 0 191
ENST00000506702 PACRGL-011 nonsense_mediated_decay Homo_sapiens 0 628
ENST00000506951 PACRGL-008 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000507634 PACRGL-016 protein_coding Homo_sapiens 0 641
ENST00000509469 PACRGL-024 protein_coding Homo_sapiens 0 433
ENST00000510051 PACRGL-004 protein_coding Homo_sapiens 0 608
ENST00000513590 PACRGL-029 protein_coding Homo_sapiens 0 628
ENST00000514485 PACRGL-020 protein_coding Homo_sapiens 0 372

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