C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031059 Ppargc1a-002 ENSMUSG00000029167 10090 - 5:51457982-51553857 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031059
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031059 0.415±0.06 0.329±0.13 0.229±0.00 0.912±0.65 2.414±0.57 5.412±0.26 4.325±1.33 0.310±0.08 0.223±0.05 1.433±0.00 0.323±0.04 0.286±0.00 0.190±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OU CIL_0002OU_0002 CGP 5:49959951-51567725
CIL_0007ZS CIL_0007ZS_0002 VISTA 5:51291179-51892760
CIL_00033R CIL_00033R_0003 CGP 5:51454249-52190519

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0014850 IDA response to muscle activity
GO:0022904 IDA respiratory electron transport chain
GO:0031490 IDA chromatin DNA binding
GO:0034599 IMP cellular response to oxidative stress
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264867 PPARGC1A-001 protein_coding Homo_sapiens 0 2453
ENST00000503714 PPARGC1A-014 processed_transcript Homo_sapiens 0 261
ENST00000506055 PPARGC1A-007 nonsense_mediated_decay Homo_sapiens 0 3685
ENST00000507342 PPARGC1A-003 processed_transcript Homo_sapiens 0 335
ENST00000507380 PPARGC1A-004 protein_coding Homo_sapiens 0 416
ENST00000508380 PPARGC1A-011 processed_transcript Homo_sapiens 0 311
ENST00000509642 PPARGC1A-005 processed_transcript Homo_sapiens 0 826
ENST00000509702 PPARGC1A-006 processed_transcript Homo_sapiens 0 2224
ENST00000512169 PPARGC1A-012 processed_transcript Homo_sapiens 0 311
ENST00000513205 PPARGC1A-008 nonsense_mediated_decay Homo_sapiens 0 1238
ENST00000514479 PPARGC1A-013 retained_intron Homo_sapiens 0 346
ENST00000514494 PPARGC1A-002 retained_intron Homo_sapiens 0 261
ENST00000515534 PPARGC1A-015 processed_transcript Homo_sapiens 0 411
ENST00000612355 PPARGC1A-201 protein_coding Homo_sapiens 0 1260
ENST00000613098 PPARGC1A-202 protein_coding Homo_sapiens 0 2453
ENST00000617484 PPARGC1A-203 protein_coding Homo_sapiens 0 1238

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