C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoserine phosphatase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031399 Psph-001 ENSMUSG00000029446 10090 - 5:129765558-129787204 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031399
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031399 14.323±4.06 9.131±1.32 5.232±0.94 7.793±2.08 12.502±2.81 3.558±0.83 2.257±0.50 9.408±1.07 13.545±11.16 4.856±0.67 4.180±0.25 5.683±1.23 21.642±15.50 8.887±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IC CIL_0004IC_0002 CGP 5:129725063-129787252
CIL_000645 CIL_000645_0002 CGP 5:129765558-129845820

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IBA:ISS magnesium ion binding
GO:0004647 IBA:ISS phosphoserine phosphatase activity
GO:0005509 ISS calcium ion binding
GO:0005737 IBA cytoplasm
GO:0006563 ISS L-serine metabolic process
GO:0006564 IBA L-serine biosynthetic process
GO:0009612 IEA response to mechanical stimulus
GO:0016311 IBA dephosphorylation
GO:0031667 IEA response to nutrient levels
GO:0033574 IEA response to testosterone
GO:0042803 IEA protein homodimerization activity
GO:0043005 IEA neuron projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000275605 PSPH-001 protein_coding Homo_sapiens 0 774
ENST00000395471 PSPH-002 protein_coding Homo_sapiens 0 774
ENST00000419984 PSPH-007 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000421312 PSPH-003 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000421626 PSPH-009 protein_coding Homo_sapiens 0 634
ENST00000424596 PSPH-010 protein_coding Homo_sapiens 0.000000004 66
ENST00000427797 PSPH-011 nonsense_mediated_decay Homo_sapiens 1.4013e-45 187
ENST00000437355 PSPH-012 nonsense_mediated_decay Homo_sapiens 0 776
ENST00000459834 PSPH-008 processed_transcript Homo_sapiens 0 298
ENST00000472406 RP11-208G20.2-001 processed_pseudogene Homo_sapiens 7e-29 128

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