C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-stranded DNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031971 Ssbp1-002 ENSMUSG00000029911 10090 + 6:40471415-40478587 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungOvaryTestisENSMUST00000031971
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Ovary Testis
ENSMUST00000031971 1.570±0.45 4.297±0.00 2.290±1.17 2.111±0.83 1.708±0.48 7.148±4.70 1.405±0.31 4.665±0.24 0.900±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A1 CIL_0003A1_0002 CGP 6:40442863-40481823
CIL_0003A0 CIL_0003A0_0002 CGP 6:40471352-40492239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006260 IEA DNA replication
GO:0042645 ISS mitochondrial nucleoid
GO:0044822 IEA poly(A) RNA binding
GO:0051096 IEA positive regulation of helicase activity
GO:0070062 IEA extracellular vesicular exosome
GO:0070584 IMP mitochondrion morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265304 SSBP1-001 protein_coding Homo_sapiens 0 566
ENST00000445848 RP4-654C18.1-001 processed_pseudogene Homo_sapiens 0 311
ENST00000463093 SSBP1-008 protein_coding Homo_sapiens 0 503
ENST00000465167 SSBP1-013 processed_transcript Homo_sapiens 0 490
ENST00000465582 SSBP1-014 protein_coding Homo_sapiens 0 566
ENST00000467681 SSBP1-007 protein_coding Homo_sapiens 0 564
ENST00000469123 SSBP1-012 processed_transcript Homo_sapiens 0 496
ENST00000481508 SSBP1-006 protein_coding Homo_sapiens 0 564
ENST00000484178 SSBP1-010 protein_coding Homo_sapiens 0 564
ENST00000489378 SSBP1-003 retained_intron Homo_sapiens 0 584
ENST00000498107 SSBP1-005 protein_coding Homo_sapiens 0 562
ENST00000570667 SSBP1-001 protein_coding Homo_sapiens 0 564
ENST00000571430 SSBP1-005 protein_coding Homo_sapiens 0 560
ENST00000571709 SSBP1-008 protein_coding Homo_sapiens 0 503
ENST00000572755 SSBP1-013 processed_transcript Homo_sapiens 0 488
ENST00000574068 SSBP1-012 processed_transcript Homo_sapiens 0 494
ENST00000574199 SSBP1-010 protein_coding Homo_sapiens 0 562
ENST00000575059 SSBP1-014 protein_coding Homo_sapiens 0 564
ENST00000575352 SSBP1-003 retained_intron Homo_sapiens 0 584
ENST00000576311 SSBP1-007 protein_coding Homo_sapiens 0 562
ENST00000576834 SSBP1-006 protein_coding Homo_sapiens 0 562
ENST00000612337 SSBP1-201 protein_coding Homo_sapiens 0 566

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