C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5-hydroxymethylcytosine (hmC) binding, ES cell specific
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032141 Hmces-001 ENSMUSG00000030060 10090 + 6:87913935-87936629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverOvaryPlacentaTestisENSMUST00000032141
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Ovary Placenta Testis
ENSMUST00000032141 11.903±0.00 12.980±0.58 10.778±0.00 11.874±0.00 12.439±1.62 11.297±0.51 10.223±2.53 20.747±1.08 24.551±0.00 8.746±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030Z CIL_00030Z_0002 CGP 6:87887814-87936629
CIL_000310 CIL_000310_0002 CGP 6:87913935-87981637

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0008233 IEA peptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000383463 HMCES-001 protein_coding Homo_sapiens 0 1081
ENST00000389735 HMCES-002 protein_coding Homo_sapiens 0 1081
ENST00000417226 HMCES-004 protein_coding Homo_sapiens 0 521
ENST00000502878 HMCES-003 protein_coding Homo_sapiens 0 1081
ENST00000509042 HMCES-005 protein_coding Homo_sapiens 0 667
ENST00000509551 HMCES-009 protein_coding Homo_sapiens 0 811
ENST00000510314 HMCES-006 protein_coding Homo_sapiens 0 381
ENST00000511665 HMCES-007 protein_coding Homo_sapiens 0 254

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