C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: growth differentiation factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032211 Gdf3-001 ENSMUSG00000030117 10090 - 6:122605403-122610087 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032211
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032211 0.161±0.12 0.061±0.04 0.017±0.01 0.008±0.00 0.069±0.04 0.091±0.03 0.043±0.00 0.022±0.01 0.588±0.64 0.035±0.01 0.020±0.00 0.153±0.16 0.042±0.02 0.042±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323
CIL_00001I CIL_00001I_0002 CGP 6:122577792-122610087
CIL_00001B CIL_00001B_0002 CGP 6:122605403-122630272

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 ISS skeletal system development
GO:0001654 ISS eye development
GO:0001701 IMP in utero embryonic development
GO:0002021 IMP response to dietary excess
GO:0005125 IEA cytokine activity
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005737 ISS cytoplasm
GO:0007165 IMP signal transduction
GO:0007492 IMP endoderm development
GO:0007498 IMP mesoderm development
GO:0008083 IEA growth factor activity
GO:0010453 ISS regulation of cell fate commitment
GO:0019901 ISS protein kinase binding
GO:0030514 ISS negative regulation of BMP signaling pathway
GO:0030903 IMP notochord development
GO:0032525 IMP somite rostral/caudal axis specification
GO:0040007 IEA growth
GO:0045605 ISS negative regulation of epidermal cell differentiation
GO:0045662 IMP negative regulation of myoblast differentiation
GO:0048859 IMP formation of anatomical boundary
GO:0090009 IMP primitive streak formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329913 GDF3-001 protein_coding Homo_sapiens 0 723

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