C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein S11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032840 Mrps11-001 ENSMUSG00000030611 10090 + 7:78783119-78792989 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032840
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032840 8.497±3.40 13.358±5.46 7.637±2.94 10.259±3.45 6.570±2.12 11.561±1.98 7.990±3.49 14.836±3.30 12.501±6.96 5.066±0.55 7.816±1.75 15.389±5.99 13.547±5.28 12.501±1.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AZ CIL_0001AZ_0002 CGP 7:78192362-78783531
CIL_00011G CIL_00011G_0002 CGP 7:78775236-78792989
CIL_00011H CIL_00011H_0002 CGP 7:78783119-78847236

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0005763 ISO mitochondrial small ribosomal subunit
GO:0006412 IEA translation
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325844 MRPS11-001 protein_coding Homo_sapiens 0 477
ENST00000353598 MRPS11-002 protein_coding Homo_sapiens 0 357
ENST00000558406 MRPS11-010 retained_intron Homo_sapiens 0 477
ENST00000558548 MRPS11-006 retained_intron Homo_sapiens 0 255
ENST00000559323 MRPS11-008 retained_intron Homo_sapiens 0 472
ENST00000560708 MRPS11-004 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000561262 MRPS11-003 retained_intron Homo_sapiens 0 230

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