C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032998 Rps3-001 ENSMUSG00000030744 10090 - 7:99477896-99483738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032998
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032998 201.906±94.84 97.097±6.69 225.405±0.00 126.319±80.16 192.870±16.95 218.701±31.63 86.481±13.68 181.480±34.43 181.370±129.43 195.099±12.33 56.698±4.54 260.966±76.76 185.813±87.25 31.502±15.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NG CIL_0008NG_0002 VISTA 7:99059661-99661402
CIL_0008I3 CIL_0008I3_0002 VISTA 7:99464975-100069320

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002181 IBA cytoplasmic translation
GO:0003684 IEA damaged DNA binding
GO:0003729 IEA mRNA binding
GO:0003735 IBA structural constituent of ribosome
GO:0003906 IBA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005515 IEA protein binding
GO:0005634 IBA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0005925 IEA focal adhesion
GO:0006281 IBA DNA repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0016020 IEA membrane
GO:0019899 IEA enzyme binding
GO:0019901 IEA protein kinase binding
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030529 ISS ribonucleoprotein complex
GO:0032088 IBA negative regulation of NF-kappaB transcription factor activity
GO:0032587 IEA ruffle membrane
GO:0042981 IBA regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0045738 IEA negative regulation of DNA repair
GO:0051018 IEA protein kinase A binding
GO:0051059 IEA NF-kappaB binding
GO:0051092 IEA positive regulation of NF-kappaB transcription factor activity
GO:0070062 IEA extracellular vesicular exosome
GO:0071159 IEA NF-kappaB complex
GO:1902546 IEA positive regulation of DNA N-glycosylase activity
GO:2001235 IEA positive regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278572 RPS3-014 protein_coding Homo_sapiens 0 658
ENST00000407940 RP11-69L16.5-001 processed_pseudogene Homo_sapiens 0 813
ENST00000421346 RPS3P2-001 processed_pseudogene Homo_sapiens 0 390
ENST00000422465 RPS3-013 protein_coding Homo_sapiens 0 776
ENST00000433853 RP11-778D9.4-001 processed_pseudogene Homo_sapiens 0 865
ENST00000456781 RPS3P1-001 processed_pseudogene Homo_sapiens 5e-34 147
ENST00000524851 RPS3-022 protein_coding Homo_sapiens 0 976
ENST00000525690 RPS3-023 nonsense_mediated_decay Homo_sapiens 0 372
ENST00000525933 RPS3-008 protein_coding Homo_sapiens 0 540
ENST00000526248 RPS3-025 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000526608 RPS3-021 protein_coding Homo_sapiens 0 625
ENST00000527273 RPS3-020 protein_coding Homo_sapiens 0 298
ENST00000527446 RPS3-004 protein_coding Homo_sapiens 0 985
ENST00000528439 RPS3-010 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000528847 RPS3-019 protein_coding Homo_sapiens 0 599
ENST00000529173 RPS3-005 retained_intron Homo_sapiens 0 640
ENST00000529285 RPS3-017 processed_transcript Homo_sapiens 0 394
ENST00000530164 RPS3-007 protein_coding Homo_sapiens 0 475
ENST00000530170 RPS3-024 nonsense_mediated_decay Homo_sapiens 0 392
ENST00000530721 RPS3-012 nonsense_mediated_decay Homo_sapiens 0 754
ENST00000531188 RPS3-001 protein_coding Homo_sapiens 0 1101
ENST00000532872 RPS3-015 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000534440 RPS3-016 protein_coding Homo_sapiens 0 364
ENST00000534555 RPS3-018 processed_transcript Homo_sapiens 0 267

Loading