C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonucleotide reductase M1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033283 Rrm1-201 ENSMUSG00000030978 10090 + 7:102441695-102469771 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033283
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033283 7.795±4.92 4.860±0.95 2.941±0.57 12.717±6.38 5.166±0.42 5.647±1.26 2.141±0.42 3.542±0.19 30.991±34.01 5.620±0.46 4.970±2.15 12.704±3.89 27.672±17.85 14.524±12.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LF CIL_0005LF_0002 CGP 7:102267824-102469771

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 IEA mitotic cell cycle
GO:0004748 IDA ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005635 IEA nuclear envelope
GO:0005737 IEA cytoplasm
GO:0006206 IEA pyrimidine nucleobase metabolic process
GO:0006260 IEA DNA replication
GO:0008584 IEA male gonad development
GO:0009263 IDA deoxyribonucleotide biosynthetic process
GO:0010212 IEA response to ionizing radiation
GO:0017076 IDA purine nucleotide binding
GO:0021846 IEA cell proliferation in forebrain
GO:0042995 IEA cell projection
GO:0043025 IEA neuronal cell body
GO:0051259 IPI protein oligomerization
GO:0051290 IPI protein heterotetramerization
GO:0055114 IEA oxidation-reduction process
GO:0060041 IEA retina development in camera-type eye
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300738 RRM1-001 protein_coding Homo_sapiens 0 3110
ENST00000526304 RRM1-012 processed_transcript Homo_sapiens 0 540
ENST00000526350 RRM1-010 retained_intron Homo_sapiens 0 523
ENST00000526865 RRM1-009 processed_transcript Homo_sapiens 0 252
ENST00000528442 RRM1-014 nonsense_mediated_decay Homo_sapiens 0 880
ENST00000528470 RRM1-013 processed_transcript Homo_sapiens 0 542
ENST00000529109 RRM1-015 retained_intron Homo_sapiens 0 551
ENST00000530368 RRM1-011 retained_intron Homo_sapiens 0 370
ENST00000531591 RRM1-016 retained_intron Homo_sapiens 0 664
ENST00000532170 RRM1-017 nonsense_mediated_decay Homo_sapiens 0 2935
ENST00000532710 RRM1-008 processed_transcript Homo_sapiens 0 291
ENST00000533349 RRM1-003 nonsense_mediated_decay Homo_sapiens 0 2695
ENST00000533495 RRM1-006 nonsense_mediated_decay Homo_sapiens 0 1943
ENST00000534285 RRM1-005 protein_coding Homo_sapiens 0 2259

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