C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: naked cuticle 1 homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034086 Nkd1-201 ENSMUSG00000031661 10090 + 8:88521344-88594887 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034086
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034086 11.146±2.13 14.203±0.76 18.668±1.33 4.954±1.95 3.627±1.15 8.739±0.57 0.541±0.16 2.075±0.23 1.408±0.93 29.519±11.21 0.174±0.04 9.999±4.42 1.436±0.72 0.578±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PU CIL_0003PU_0002 CGP 8:88331039-88594887
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00090I CIL_00090I_0002 VISTA 8:88457981-89059109
CIL_00085B CIL_00085B_0002 VISTA 8:88474689-89076074
CIL_00090J CIL_00090J_0002 VISTA 8:88479183-89079972
CIL_0003PT CIL_0003PT_0002 CGP 8:88521344-88636128

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000159 IEA protein phosphatase type 2A complex
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0016055 IEA Wnt signaling pathway
GO:0030154 IEA cell differentiation
GO:0030165 IPI PDZ domain binding
GO:0030178 IGI negative regulation of Wnt signaling pathway
GO:0045732 IEA positive regulation of protein catabolic process
GO:0090090 IDA negative regulation of canonical Wnt signaling pathway
GO:1901231 IDA positive regulation of non-canonical Wnt signaling pathway via JNK cascade
GO:1901233 IMP negative regulation of convergent extension involved in axis elongation
GO:2000096 IDA positive regulation of Wnt signaling pathway, planar cell polarity pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268459 NKD1-001 protein_coding Homo_sapiens 0 1855
ENST00000564336 NKD1-002 processed_transcript Homo_sapiens 0 388

Loading