C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: component of oligomeric golgi complex 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034460 Cog2-001 ENSMUSG00000031979 10090 + 8:124520767-124552008 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034460 12.135±0.86 8.158±1.43 10.736±0.89 9.756±2.40 6.189±2.03 15.772±1.82 3.478±0.74 10.219±0.82 6.775±1.81 6.854±1.07 3.672±0.65 11.957±2.92 11.421±1.80 7.278±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A0 CIL_0008A0_0002 VISTA 8:123980149-124582109
CIL_0007WK CIL_0007WK_0002 VISTA 8:124343702-124945898
CIL_00060Z CIL_00060Z_0002 CGP 8:124369049-124552008
CIL_000610 CIL_000610_0002 CGP 8:124520767-124569706

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005795 IEA Golgi stack
GO:0005829 IEA cytosol
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0007030 IEA Golgi organization
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017119 IEA Golgi transport complex
GO:0032403 IEA protein complex binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366668 COG2-002 protein_coding Homo_sapiens 0 1712
ENST00000366669 COG2-001 protein_coding Homo_sapiens 0 1725
ENST00000468893 COG2-009 nonsense_mediated_decay Homo_sapiens 0 1339
ENST00000494371 COG2-003 retained_intron Homo_sapiens 0 736
ENST00000534989 COG2-010 protein_coding Homo_sapiens 0 1605

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