C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SprT-like N-terminal domain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034467 Sprtn-201 ENSMUSG00000031986 10090 + 8:124897886-124903813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034467
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034467 7.396±1.62 8.430±1.47 3.849±0.00 7.791±0.93 8.782±3.92 8.536±2.00 2.074±1.01 4.514±0.90 2.988±1.61 9.744±0.84 1.343±0.72 14.550±3.70 8.224±0.48 32.167±13.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WK CIL_0007WK_0002 VISTA 8:124343702-124945898
CIL_0006B4 CIL_0006B4_0002 CGP 8:124890300-124903813
CIL_0006AZ CIL_0006AZ_0002 CGP 8:124897886-124949254

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005694 IEA chromosome
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0009411 ISS response to UV
GO:0016607 IEA nuclear speck
GO:0019985 ISS translesion synthesis
GO:0031398 ISS positive regulation of protein ubiquitination
GO:0043130 ISS ubiquitin binding
GO:0046872 IEA metal ion binding
GO:0070530 ISS K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000008440 SPRTN-003 protein_coding Homo_sapiens 0 259
ENST00000295050 SPRTN-001 protein_coding Homo_sapiens 0 765
ENST00000366644 SPRTN-004 protein_coding Homo_sapiens 0 477
ENST00000391858 SPRTN-002 protein_coding Homo_sapiens 0 651
ENST00000469904 SPRTN-006 processed_transcript Homo_sapiens 0 464

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