C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 11 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034644 Vps11-201 ENSMUSG00000032127 10090 - 9:44348106-44361670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034644
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034644 15.744±1.66 23.700±2.92 8.846±0.58 18.250±8.44 11.246±1.46 8.306±0.68 5.613±0.64 15.377±1.49 8.318±1.34 11.461±0.63 8.388±0.53 18.628±3.26 16.771±5.59 10.032±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MF CIL_0003MF_0002 CGP 9:44348106-44392369

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005764 IEA lysosome
GO:0005769 IDA early endosome
GO:0005884 IDA actin filament
GO:0006886 IEA intracellular protein transport
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030139 ISS endocytic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000524454 VPS11-009 processed_transcript Homo_sapiens 9.99995e-41 171
ENST00000526829 VPS11-007 retained_intron Homo_sapiens 0 302
ENST00000529545 VPS11-006 retained_intron Homo_sapiens 0 239
ENST00000530809 VPS11-005 protein_coding Homo_sapiens 0 492
ENST00000534551 VPS11-008 processed_transcript Homo_sapiens 0 527
ENST00000614944 VPS11-002 protein_coding Homo_sapiens 0 3587
ENST00000620429 VPS11-201 protein_coding Homo_sapiens 0 3265
ENST00000621676 VPS11-001 protein_coding Homo_sapiens 0 3879
ENST00000622309 VPS11-004 retained_intron Homo_sapiens 0 1951

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