C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035471 Lama1-201 ENSMUSG00000032796 10090 + 17:67697265-67822645 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035471
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035471 0.174±0.17 1.582±0.27 0.159±0.02 2.139±1.33 0.452±0.12 0.284±0.11 0.008±0.00 1.486±0.73 0.564±0.18 0.141±0.05 0.004±0.00 22.316±5.02 28.813±17.65 1.227±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006L1 CIL_0006L1_0002 CGP 17:67630965-67822645
CIL_0006L2 CIL_0006L2_0002 CGP 17:67697265-68004120

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002011 IMP morphogenesis of an epithelial sheet
GO:0005102 IEA receptor binding
GO:0005201 IDA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005605 TAS basal lamina
GO:0005606 IDA laminin-1 complex
GO:0005608 IEA laminin-3 complex
GO:0005615 IEA extracellular space
GO:0005911 IDA cell-cell junction
GO:0007155 IEA cell adhesion
GO:0007166 IDA cell surface receptor signaling pathway
GO:0009888 IMP tissue development
GO:0030155 IEA regulation of cell adhesion
GO:0030334 IEA regulation of cell migration
GO:0031012 IDA extracellular matrix
GO:0031175 IDA neuron projection development
GO:0043208 IDA glycosphingolipid binding
GO:0043256 IDA laminin complex
GO:0045198 IMP establishment of epithelial cell apical/basal polarity
GO:0045995 IEA regulation of embryonic development
GO:0060041 IMP retina development in camera-type eye
GO:0060441 IMP epithelial tube branching involved in lung morphogenesis
GO:0060445 IMP branching involved in salivary gland morphogenesis
GO:0061304 IMP retinal blood vessel morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389658 LAMA1-001 protein_coding Homo_sapiens 0 6253
ENST00000488064 LAMA1-002 retained_intron Homo_sapiens 0 1020
ENST00000492048 LAMA1-003 retained_intron Homo_sapiens 0 828
ENST00000579014 LAMA1-007 retained_intron Homo_sapiens 0 5169

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