C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: oligodendrocyte transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035608 Olig2-001 ENSMUSG00000039830 10090 + 16:91225550-91228677 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000035608
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000035608 0.014±0.00 0.013±0.00 0.008±0.00 6.460±1.89 0.071±0.03 0.012±0.00 0.011±0.01 0.027±0.00 0.037±0.02 0.092±0.08 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0002 VISTA 16:90804484-91407069
CIL_00087M CIL_00087M_0002 VISTA 16:90839145-91442270
CIL_0009BQ CIL_0009BQ_0002 VISTA 16:90840152-91441411
CIL_0007UY CIL_0007UY_0002 VISTA 16:90990868-91593443
CIL_0007LZ CIL_0007LZ_0006 UCNEbase 16:91140494-91293136
CIL_0001C5 CIL_0001C5_0002 CGP 16:91225550-91271933

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 ISS transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007399 IDA nervous system development
GO:0021522 IMP spinal cord motor neuron differentiation
GO:0021529 IGI spinal cord oligodendrocyte cell differentiation
GO:0021530 IDA spinal cord oligodendrocyte cell fate specification
GO:0021794 IMP thalamus development
GO:0042552 IMP myelination
GO:0042803 IPI protein homodimerization activity
GO:0045665 IDA negative regulation of neuron differentiation
GO:0048663 IMP neuron fate commitment
GO:0048709 IMP oligodendrocyte differentiation
GO:0048714 IGI positive regulation of oligodendrocyte differentiation
GO:0071837 IPI HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321870 BHLHE22-001 protein_coding Homo_sapiens 1e-26 126
ENST00000333337 OLIG2-002 protein_coding Homo_sapiens 0 1242
ENST00000367734 OLIG3-001 protein_coding Homo_sapiens 0 279
ENST00000370346 BHLHE23-201 protein_coding Homo_sapiens 1e-31 141
ENST00000382357 OLIG2-001 protein_coding Homo_sapiens 0 1243
ENST00000430860 OLIG2-003 protein_coding Homo_sapiens 0 213
ENST00000612929 BHLHE23-001 protein_coding Homo_sapiens 1e-31 141

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