C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035651 Lrrc17-201 ENSMUSG00000039883 10090 + 5:21543527-21575900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035651
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035651 19.189±13.30 0.807±0.15 9.375±0.62 306.775±428.81 11.587±0.65 2.870±0.43 1.687±0.10 0.696±0.11 0.607±0.59 3.220±0.31 0.771±0.29 15.636±3.30 9.548±11.24 7.904±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y6 CIL_0007Y6_0002 VISTA 5:21195900-21797355
CIL_0005CF CIL_0005CF_0002 CGP 5:21424958-21645605
CIL_0005CK CIL_0005CK_0002 CGP 5:21483847-21645605
CIL_0005CL CIL_0005CL_0002 CGP 5:21543527-21662694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005615 IDA extracellular space
GO:0045671 IDA negative regulation of osteoclast differentiation
GO:0048539 IDA bone marrow development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249377 LRRC17-001 protein_coding Homo_sapiens 0 970
ENST00000313221 FBXL13-001 protein_coding Homo_sapiens 2e-18 99
ENST00000339431 LRRC17-002 protein_coding Homo_sapiens 0 1410
ENST00000379305 FBXL13-003 protein_coding Homo_sapiens 2e-18 99
ENST00000379308 FBXL13-201 protein_coding Homo_sapiens 2e-18 99
ENST00000436908 FBXL13-006 protein_coding Homo_sapiens 2e-18 99
ENST00000448002 FBXL13-002 nonsense_mediated_decay Homo_sapiens 2e-18 99
ENST00000455112 FBXL13-005 protein_coding Homo_sapiens 2e-18 99
ENST00000455453 LRRC17-004 protein_coding Homo_sapiens 0 241
ENST00000456695 FBXL13-007 protein_coding Homo_sapiens 5e-18 97
ENST00000477915 FBXL13-010 processed_transcript Homo_sapiens 6e-19 99
ENST00000485478 LRRC17-005 processed_transcript Homo_sapiens 0 427
ENST00000498487 LRRC17-003 processed_transcript Homo_sapiens 9e-26 121

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