C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036253 Tnrc18-201 ENSMUSG00000039477 10090 - 5:142754796-142817387 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000036253
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000036253 1.458±0.63 5.185±2.57 7.372±3.49 1.493±0.26 2.971±1.55 0.447±0.01 1.482±0.69 0.513±0.22 1.726±0.00 3.175±0.92 1.395±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_00027K CIL_00027K_0003 CGP 5:142702101-142817662
CIL_0002M4 CIL_0002M4_0002 CGP 5:142750380-142895421

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003682 IEA chromatin binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399434 TNRC18-002 protein_coding Homo_sapiens 0 213
ENST00000399537 TNRC18-001 protein_coding Homo_sapiens 0 3936
ENST00000413081 TNRC18-010 protein_coding Homo_sapiens 0 961
ENST00000430969 TNRC18-201 protein_coding Homo_sapiens 0 3936
ENST00000434361 TNRC18-009 protein_coding Homo_sapiens 0 213
ENST00000440081 TNRC18-014 protein_coding Homo_sapiens 0 652
ENST00000502875 TNRC18P1-001 processed_pseudogene Homo_sapiens 0 2106

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