C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fanconi anemia, complementation group D2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036340 Fancd2-001 ENSMUSG00000034023 10090 + 6:113531682-113597017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036340
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036340 0.491±0.37 0.181±0.06 1.679±0.31 1.464±0.80 0.318±0.16 0.356±0.11 0.047±0.01 0.120±0.01 2.607±2.56 0.377±0.18 0.061±0.01 0.740±0.23 1.907±1.22 4.223±1.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D5 CIL_0002D5_0002 CGP 6:113514874-113597017
CIL_00059I CIL_00059I_0002 CGP 6:113531682-113600715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000793 IDA condensed chromosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005794 IEA Golgi apparatus
GO:0006281 IEA DNA repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007129 IMP synapsis
GO:0007275 IEA multicellular organismal development
GO:0007276 IMP gamete generation
GO:0010332 IEA response to gamma radiation
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0070182 IEA DNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287647 FANCD2-001 protein_coding Homo_sapiens 0 3437
ENST00000383807 FANCD2-201 protein_coding Homo_sapiens 0 3465
ENST00000419585 FANCD2-002 protein_coding Homo_sapiens 0 3461
ENST00000421731 FANCD2-004 nonsense_mediated_decay Homo_sapiens 0 1587

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