C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stabilin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036618 Stab1-001 ENSMUSG00000042286 10090 - 14:31139013-31168641 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036618
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036618 22.681±0.62 15.874±1.80 11.675±1.40 4.154±0.74 18.950±4.74 12.866±0.71 9.070±0.93 6.416±0.37 5.883±1.15 21.569±3.47 1.326±0.37 25.206±8.19 3.961±1.11 1.235±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522
CIL_00002S CIL_00002S_0002 CGP 14:31139013-31216946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005041 IEA low-density lipoprotein receptor activity
GO:0005044 IEA scavenger receptor activity
GO:0005540 IEA hyaluronic acid binding
GO:0005737 ISO cytoplasm
GO:0005887 IEA integral component of plasma membrane
GO:0007155 IEA cell adhesion
GO:0007267 IEA cell-cell signaling
GO:0016525 IEA negative regulation of angiogenesis
GO:0030169 IEA low-density lipoprotein particle binding
GO:0042742 IEA defense response to bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307076 NT5DC2-001 protein_coding Homo_sapiens 2e-17 95
ENST00000321725 STAB1-001 protein_coding Homo_sapiens 0 6606
ENST00000422318 NT5DC2-016 protein_coding Homo_sapiens 2e-17 95
ENST00000461325 STAB1-003 retained_intron Homo_sapiens 0 416
ENST00000462261 NT5DC2-005 retained_intron Homo_sapiens 0.000000000000003 88
ENST00000462681 STAB1-005 retained_intron Homo_sapiens 0 455
ENST00000462741 STAB1-006 retained_intron Homo_sapiens 0 1059
ENST00000463947 NT5DC2-014 protein_coding Homo_sapiens 7e-18 95
ENST00000469989 STAB1-009 protein_coding Homo_sapiens 0 353
ENST00000479024 NT5DC2-004 retained_intron Homo_sapiens 2e-17 95
ENST00000481607 STAB1-002 retained_intron Homo_sapiens 0 1591
ENST00000481626 STAB1-004 retained_intron Homo_sapiens 0 1352
ENST00000484850 STAB1-008 retained_intron Homo_sapiens 0 298

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