C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: expressed sequence AW554918
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036619 AW554918-003 ENSMUSG00000033632 10090 + 18:25169010-25467316 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungMuscleOvaryPlacentaTestisENSMUST00000036619
Transcript ID Colon Lung Muscle Ovary Placenta Testis
ENSMUST00000036619 0.956±0.00 0.993±0.17 0.349±0.08 1.839±0.32 0.356±0.00 9.589±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VO CIL_0003VO_0002 CGP 18:24709445-25169007
CIL_0008E2 CIL_0008E2_0002 VISTA 18:24940595-25541640
CIL_00092R CIL_00092R_0002 VISTA 18:25077370-25678646
CIL_0002FL CIL_0002FL_0003 CGP 18:25127223-25467321
CIL_0002FC CIL_0002FC_0003 CGP 18:25168999-25753983

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000280020 KIAA1328-001 protein_coding Homo_sapiens 0 1363
ENST00000477323 RP11-529G21.3-001 processed_pseudogene Homo_sapiens 0 597
ENST00000586135 KIAA1328-006 protein_coding Homo_sapiens 0 396
ENST00000586501 KIAA1328-007 protein_coding Homo_sapiens 0 398
ENST00000587139 KIAA1328-008 protein_coding Homo_sapiens 0 808
ENST00000590617 KIAA1328-004 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000591619 KIAA1328-005 protein_coding Homo_sapiens 0 1291
ENST00000592521 KIAA1328-003 protein_coding Homo_sapiens 0 505
ENST00000592611 KIAA1328-002 nonsense_mediated_decay Homo_sapiens 0 948
ENST00000599493 KIAA1328-012 retained_intron Homo_sapiens 0 198

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