C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: distal-less homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037119 Dlx1-001 ENSMUSG00000041911 10090 + 2:71528113-71533980 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000037119
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000037119 0.061±0.01 12.719±4.81 0.035±0.00 0.040±0.01 0.046±0.02 0.008±0.00 0.055±0.00 0.030±0.01 0.012±0.00 0.030±0.00 0.041±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RB CIL_0007RB_0003 VISTA 2:71118479-71722071
CIL_0008A7 CIL_0008A7_0002 VISTA 2:71118555-71719483
CIL_0008C9 CIL_0008C9_0002 VISTA 2:71216484-71818219
CIL_0009AY CIL_0009AY_0002 VISTA 2:71227336-71828847
CIL_0008AZ CIL_0008AZ_0002 VISTA 2:71235378-71836557
CIL_0008B0 CIL_0008B0_0002 VISTA 2:71237156-71838581
CIL_0007JJ CIL_0007JJ_002C UCNEbase 2:71244754-71538420
CIL_0004K6 CIL_0004K6_0002 CGP 2:71453276-71533981
CIL_00062L CIL_00062L_0003 CGP 2:71528113-71546754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0009954 IGI proximal/distal pattern formation
GO:0021544 IGI subpallium development
GO:0021766 IGI hippocampus development
GO:0021879 IGI forebrain neuron differentiation
GO:0021882 IGI regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0021892 IGI cerebral cortex GABAergic interneuron differentiation
GO:0021893 IGI cerebral cortex GABAergic interneuron fate commitment
GO:0030154 IMP cell differentiation
GO:0042475 IGI odontogenesis of dentin-containing tooth
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0045746 IGI negative regulation of Notch signaling pathway
GO:0048706 IGI embryonic skeletal system development
GO:0048715 IGI negative regulation of oligodendrocyte differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341900 DLX1-002 protein_coding Homo_sapiens 0 793
ENST00000361609 DLX1-006 protein_coding Homo_sapiens 0 1393
ENST00000361725 DLX1-001 protein_coding Homo_sapiens 0 1729
ENST00000409492 DLX1-005 retained_intron Homo_sapiens 0 1042
ENST00000469444 DLX1-004 protein_coding Homo_sapiens 0 1007
ENST00000475989 DLX1-003 retained_intron Homo_sapiens 0 566

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