C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methionine-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037290 Mars-001 ENSMUSG00000040354 10090 - 10:127296221-127311786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037290
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037290 22.359±4.51 30.118±2.81 17.043±5.31 9.367±3.19 20.817±3.30 16.869±1.76 7.712±0.58 16.151±1.22 28.873±11.29 15.270±0.66 2.650±0.00 29.724±8.20 20.023±8.90 12.475±3.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A8 CIL_0003A8_0002 CGP 10:127281956-127296288
CIL_0003A7 CIL_0003A7_0002 CGP 10:127290774-127311786
CIL_00039K CIL_00039K_0002 CGP 10:127296221-127329943

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0004825 IEA methionine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006431 IEA methionyl-tRNA aminoacylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262027 MARS-003 protein_coding Homo_sapiens 0 3133
ENST00000447721 MARS-005 processed_transcript Homo_sapiens 0 1264
ENST00000537638 MARS-002 nonsense_mediated_decay Homo_sapiens 0 1875
ENST00000545888 MARS-004 nonsense_mediated_decay Homo_sapiens 0 2252
ENST00000546481 MARS-007 retained_intron Homo_sapiens 0 226
ENST00000546971 MARS-024 retained_intron Homo_sapiens 0 761
ENST00000547062 MARS-010 retained_intron Homo_sapiens 0 220
ENST00000547501 MARS-013 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000547665 MARS-033 protein_coding Homo_sapiens 0 215
ENST00000548146 MARS-016 processed_transcript Homo_sapiens 7e-37 158
ENST00000548202 MARS-027 retained_intron Homo_sapiens 0 667
ENST00000548630 MARS-025 retained_intron Homo_sapiens 0 261
ENST00000548674 MARS-008 processed_transcript Homo_sapiens 0 388
ENST00000548714 MARS-011 retained_intron Homo_sapiens 0 322
ENST00000548944 MARS-034 protein_coding Homo_sapiens 1e-31 139
ENST00000549048 MARS-026 retained_intron Homo_sapiens 0 553
ENST00000549074 MARS-015 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000549603 MARS-022 retained_intron Homo_sapiens 2e-36 156
ENST00000550449 MARS-009 retained_intron Homo_sapiens 0 401
ENST00000551172 MARS-031 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000551431 MARS-014 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000551805 MARS-028 retained_intron Homo_sapiens 0 366
ENST00000551842 MARS-012 retained_intron Homo_sapiens 0 479
ENST00000552007 MARS-019 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000552371 MARS-021 protein_coding Homo_sapiens 0 377
ENST00000552499 MARS-029 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000552914 MARS-030 protein_coding Homo_sapiens 0 483
ENST00000553123 MARS-017 retained_intron Homo_sapiens 0 490
ENST00000553162 MARS-020 retained_intron Homo_sapiens 0 568

Loading