C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: EF-hand domain (C-terminal) containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038447 Efhc1-001 ENSMUSG00000041809 10090 + 1:20951688-20990841 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038447
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038447 0.860±0.03 0.322±0.10 1.133±0.11 0.912±0.22 0.587±0.27 0.360±0.21 0.414±0.12 0.262±0.04 0.111±0.06 2.968±0.69 0.078±0.03 4.411±2.30 1.700±1.41 95.165±26.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081C CIL_00081C_0002 VISTA 1:20619958-21222635
CIL_0005N1 CIL_0005N1_0002 CGP 1:20890606-20990841
CIL_0005N7 CIL_0005N7_0002 CGP 1:20951626-21079229

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005929 IDA cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371068 EFHC1-001 protein_coding Homo_sapiens 0 1755
ENST00000480623 EFHC1-002 nonsense_mediated_decay Homo_sapiens 0 1081
ENST00000538167 EFHC1-201 protein_coding Homo_sapiens 0 1700

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