C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: outer dense fiber of sperm tails 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038932 Odf4-001 ENSMUSG00000032921 10090 - 11:68921835-68927049 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000038932
Transcript ID Bladder Brain Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000038932 0.015±0.00 0.127±0.00 0.076±0.00 0.142±0.02 0.095±0.05 0.055±0.00 0.040±0.00 0.090±0.00 28.234±15.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088C CIL_00088C_0002 VISTA 11:68323475-68924174
CIL_0009AZ CIL_0009AZ_0002 VISTA 11:68337699-68940744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001520 IDA outer dense fiber
GO:0003674 ND molecular_function
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0031514 IDA motile cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328248 ODF4-001 protein_coding Homo_sapiens 9e-39 165
ENST00000584943 ODF4-002 protein_coding Homo_sapiens 2e-38 163

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