C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: family with sequence similarity 170, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039121 Fam170a-201 ENSMUSG00000035420 10090 + 18:50278369-50283019 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyOvaryTestisENSMUST00000039121
Transcript ID Heart Kidney Ovary Testis
ENSMUST00000039121 0.025±0.00 0.055±0.00 0.022±0.00 24.280±5.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004B4 CIL_0004B4_0002 CGP 18:50128201-50283019

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0005634 IDA nucleus
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335286 FAM170A-004 nonsense_mediated_decay Homo_sapiens 0 769
ENST00000379555 FAM170A-003 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000504819 FAM170A-006 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000515256 FAM170A-001 protein_coding Homo_sapiens 0 769
ENST00000613773 FAM170A-201 protein_coding Homo_sapiens 0 769
ENST00000620555 FAM170A-202 protein_coding Homo_sapiens 0 686

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