C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurotrophic tyrosine kinase, receptor, type 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039438 Ntrk3-002 ENSMUSG00000059146 10090 - 7:78302323-78577975 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039438
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039438 2.250±0.46 5.019±1.72 6.071±0.00 8.039±1.68 0.623±0.24 1.153±0.60 1.488±0.68 0.120±0.10 2.059±0.43 0.142±0.06 6.202±2.02 0.074±0.04 1.328±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NY CIL_0000NY_0002 CGP 7:76318072-78578408
CIL_0001AZ CIL_0001AZ_0002 CGP 7:78192362-78783531

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004714 IEA transmembrane receptor protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005887 IEA integral component of plasma membrane
GO:0007623 IEP circadian rhythm
GO:0018108 IEA peptidyl-tyrosine phosphorylation
GO:0038179 IEA neurotrophin signaling pathway
GO:0042490 IMP mechanoreceptor differentiation
GO:0043235 ISO receptor complex
GO:0048691 IGI positive regulation of axon extension involved in regeneration
GO:0070306 IGI lens fiber cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317501 NTRK3-002 protein_coding Homo_sapiens 0 2852
ENST00000355254 NTRK3-201 protein_coding Homo_sapiens 0 2074
ENST00000357724 NTRK3-202 protein_coding Homo_sapiens 0 2074
ENST00000360948 NTRK3-203 protein_coding Homo_sapiens 0 2169
ENST00000394480 NTRK3-001 protein_coding Homo_sapiens 0 2169
ENST00000540489 NTRK3-204 protein_coding Homo_sapiens 0 2625
ENST00000542733 NTRK3-003 protein_coding Homo_sapiens 0 1696
ENST00000557856 NTRK3-004 protein_coding Homo_sapiens 0 2087
ENST00000558306 NTRK3-017 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000558676 NTRK3-015 protein_coding Homo_sapiens 0 2091
ENST00000559067 NTRK3-013 processed_transcript Homo_sapiens 0 405
ENST00000559188 NTRK3-005 protein_coding Homo_sapiens 0 403
ENST00000559764 NTRK3-011 processed_transcript Homo_sapiens 0 606
ENST00000560017 NTRK3-010 protein_coding Homo_sapiens 0 220

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