C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras-related GTP binding B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039720 Rragb-001 ENSMUSG00000041658 10090 + X:153139981-153171943 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000039720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000039720 0.230±0.21 0.721±0.26 0.867±0.43 17.473±2.41 0.445±0.09 0.389±0.20 0.245±0.07 0.304±0.23 0.290±0.00 1.488±0.60 0.238±0.21 1.868±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057B CIL_00057B_0002 CGP X:153118786-153171943
CIL_0006LJ CIL_0006LJ_0002 CGP X:153139981-153396132

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005525 ISS GTP binding
GO:0005634 IEA nucleus
GO:0005737 ISS cytoplasm
GO:0005764 ISS lysosome
GO:0005765 IEA lysosomal membrane
GO:0005794 IEA Golgi apparatus
GO:0032008 ISS positive regulation of TOR signaling
GO:0032561 ISS guanyl ribonucleotide binding
GO:0034613 ISS cellular protein localization
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0071230 ISS cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262850 RRAGB-001 protein_coding Homo_sapiens 0 1655
ENST00000374941 RRAGB-002 protein_coding Homo_sapiens 0 1498
ENST00000414239 RRAGB-005 protein_coding Homo_sapiens 0 658
ENST00000474757 RRAGB-003 processed_transcript Homo_sapiens 0 368
ENST00000475061 RRAGB-006 processed_transcript Homo_sapiens 0 510
ENST00000498762 RRAGB-004 processed_transcript Homo_sapiens 0 433
ENST00000555741 RP11-857B24.2-001 processed_pseudogene Homo_sapiens 0 337

Loading