C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: enhancer of mRNA decapping 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040254 Edc4-001 ENSMUSG00000036270 10090 + 8:105880881-105893225 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040254 11.776±4.26 12.908±1.93 9.456±0.72 13.635±3.54 14.883±2.31 13.473±2.94 8.642±4.17 8.369±2.40 5.940±2.55 16.861±2.68 4.093±1.03 17.471±5.26 8.928±1.44 20.244±7.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FS CIL_0007FS_0002 CGP 8:105860634-105894908
CIL_0007FU CIL_0007FU_0002 CGP 8:105880881-105895023

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 ISO cytoplasmic mRNA processing body
GO:0005515 IPI protein binding
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358933 EDC4-001 protein_coding Homo_sapiens 0 5306
ENST00000536072 EDC4-003 retained_intron Homo_sapiens 0 2418
ENST00000572031 EDC4-007 retained_intron Homo_sapiens 0 638
ENST00000572221 EDC4-002 retained_intron Homo_sapiens 0 4117
ENST00000573985 EDC4-015 protein_coding Homo_sapiens 1e-34 150
ENST00000573992 EDC4-004 retained_intron Homo_sapiens 0 4431
ENST00000574770 EDC4-005 processed_transcript Homo_sapiens 0 1567
ENST00000575033 EDC4-013 protein_coding Homo_sapiens 0 503
ENST00000575507 EDC4-012 retained_intron Homo_sapiens 0 647
ENST00000575514 EDC4-011 retained_intron Homo_sapiens 0 675
ENST00000576972 EDC4-010 retained_intron Homo_sapiens 0 564
ENST00000577105 EDC4-014 protein_coding Homo_sapiens 0 414

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