C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040783 Usp40-003 ENSMUSG00000005501 10090 - 1:87945121-88008551 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverLungMuscleOvaryENSMUST00000040783
Transcript ID Adipose Brain Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000040783 7.792±1.06 5.615±0.70 3.944±0.48 5.065±0.71 3.115±0.76 6.248±0.09 2.948±0.00 6.212±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RA CIL_0003RA_0002 CGP 1:87803680-87945180
CIL_0003R9 CIL_0003R9_0002 CGP 1:87853287-88008551
CIL_0007HK CIL_0007HK_0002 CGP 1:87945119-88219004

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251722 USP40-001 protein_coding Homo_sapiens 0 2543
ENST00000427112 USP40-017 protein_coding Homo_sapiens 0 2486
ENST00000427947 USP40-008 retained_intron Homo_sapiens 0 911
ENST00000443711 USP40-002 protein_coding Homo_sapiens 0 407
ENST00000450966 USP40-201 protein_coding Homo_sapiens 0 2486
ENST00000452724 USP40-015 protein_coding Homo_sapiens 0 250
ENST00000484528 USP40-007 retained_intron Homo_sapiens 0 763
ENST00000485943 USP40-009 processed_transcript Homo_sapiens 0 361

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