C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | synovial sarcoma translocation, Chromosome 18 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000040964  |
Ss18-202 |
ENSMUSG00000037013 |
10090 | - |
18:14624198-14682766  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007LU | CIL_0007LU_0002 | UCNEbase | 18:13186157-15176263 |
| CIL_0008CS | CIL_0008CS_0002 | VISTA | 18:14158160-14760150 |
| CIL_0006ET | CIL_0006ET_0002 | CGP | 18:14624198-14762299 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000226 | IDA | microtubule cytoskeleton organization |
| GO:0000902 | IDA | cell morphogenesis |
| GO:0005881 | IDA | cytoplasmic microtubule |
| GO:0007010 | IDA | cytoskeleton organization |
| GO:0035556 | IDA | intracellular signal transduction |
| GO:0042493 | IDA | response to drug |
| GO:0048013 | IDA | ephrin receptor signaling pathway |
| GO:0071564 | IDA | npBAF complex |
| GO:0097150 | IMP | neuronal stem cell maintenance |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000269137
|
SS18-001 | protein_coding | Homo_sapiens | 0 | 641 |
|
ENST00000269138
|
SS18-007 | nonsense_mediated_decay | Homo_sapiens | 0 | 1195 |
|
ENST00000415083
|
SS18-003 | protein_coding | Homo_sapiens | 0 | 1489 |
|
ENST00000539244
|
SS18-006 | nonsense_mediated_decay | Homo_sapiens | 0 | 603 |
|
ENST00000542420
|
SS18-002 | protein_coding | Homo_sapiens | 0 | 1489 |
|
ENST00000577572
|
SS18-011 | nonsense_mediated_decay | Homo_sapiens | 9.80909e-45 | 183 |
|
ENST00000577636
|
SS18-026 | nonsense_mediated_decay | Homo_sapiens | 0 | 233 |
|
ENST00000577751
|
SS18-008 | processed_transcript | Homo_sapiens | 0 | 217 |
|
ENST00000578595
|
SS18-021 | processed_transcript | Homo_sapiens | 5e-17 | 92 |
|
ENST00000578700
|
SS18-010 | nonsense_mediated_decay | Homo_sapiens | 0 | 361 |
|
ENST00000578954
|
SS18-014 | nonsense_mediated_decay | Homo_sapiens | 0 | 361 |
|
ENST00000579061
|
SS18-024 | protein_coding | Homo_sapiens | 0 | 451 |
|
ENST00000579640
|
SS18-004 | nonsense_mediated_decay | Homo_sapiens | 0 | 800 |
|
ENST00000580642
|
SS18-019 | nonsense_mediated_decay | Homo_sapiens | 2.8026e-45 | 185 |
|
ENST00000580751
|
SS18-018 | nonsense_mediated_decay | Homo_sapiens | 9.80909e-45 | 183 |
|
ENST00000580958
|
SS18-013 | retained_intron | Homo_sapiens | 0 | 390 |
|
ENST00000581021
|
SS18-022 | protein_coding | Homo_sapiens | 0 | 281 |
|
ENST00000581570
|
SS18-016 | nonsense_mediated_decay | Homo_sapiens | 9.80909e-45 | 183 |
|
ENST00000582448
|
SS18-009 | nonsense_mediated_decay | Homo_sapiens | 3e-16 | 90 |
|
ENST00000582792
|
SS18-017 | nonsense_mediated_decay | Homo_sapiens | 0 | 315 |
|
ENST00000584083
|
SS18-023 | protein_coding | Homo_sapiens | 0 | 449 |
|
ENST00000585121
|
SS18-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 580 |
|
ENST00000585241
|
SS18-025 | processed_transcript | Homo_sapiens | 0 | 313 |
