C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi associated, gamma adaptin ear containing, ARF binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041587 Gga1-201 ENSMUSG00000033128 10090 + 15:78877190-78894585 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041587
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041587 19.870±2.81 29.025±2.46 23.127±1.21 18.252±5.27 21.518±10.75 29.862±6.15 13.080±1.44 15.307±3.28 11.433±1.98 28.670±4.26 17.668±1.54 23.343±6.90 16.443±3.04 26.155±9.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040E CIL_00040E_0002 CGP 15:78850862-78894585
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00040D CIL_00040D_0002 CGP 15:78877190-78919517

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045732 IGI positive regulation of protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325180 GGA1-024 protein_coding Homo_sapiens 0 1101
ENST00000326597 GGA1-018 protein_coding Homo_sapiens 0 383
ENST00000343632 GGA1-001 protein_coding Homo_sapiens 0 2425
ENST00000381756 GGA1-002 protein_coding Homo_sapiens 0 1980
ENST00000405147 GGA1-007 protein_coding Homo_sapiens 0 455
ENST00000406772 GGA1-003 protein_coding Homo_sapiens 0 2237
ENST00000411501 GGA1-008 protein_coding Homo_sapiens 0 390
ENST00000413251 GGA1-015 protein_coding Homo_sapiens 0 645
ENST00000423024 GGA1-019 protein_coding Homo_sapiens 0 641
ENST00000429218 GGA1-010 protein_coding Homo_sapiens 0 725
ENST00000431745 GGA1-011 protein_coding Homo_sapiens 0 298
ENST00000439161 GGA1-009 protein_coding Homo_sapiens 0 446
ENST00000447515 GGA1-017 protein_coding Homo_sapiens 0 350
ENST00000449944 GGA1-016 protein_coding Homo_sapiens 0 913
ENST00000453208 GGA1-012 protein_coding Homo_sapiens 0 497
ENST00000460957 GGA1-022 retained_intron Homo_sapiens 0 641
ENST00000481613 GGA1-021 retained_intron Homo_sapiens 0 484
ENST00000489772 GGA1-005 retained_intron Homo_sapiens 0 333
ENST00000537686 GGA3-002 protein_coding Homo_sapiens 0 241
ENST00000538886 GGA3-001 protein_coding Homo_sapiens 0.0000000000003 82
ENST00000577435 GGA3-012 nonsense_mediated_decay Homo_sapiens 0.00000000000004 82
ENST00000578348 GGA3-004 protein_coding Homo_sapiens 0.0000000000002 82
ENST00000579743 GGA3-011 protein_coding Homo_sapiens 9e-36 154
ENST00000582376 GGA3-014 nonsense_mediated_decay Homo_sapiens 9e-31 137
ENST00000582486 GGA3-006 protein_coding Homo_sapiens 0 241
ENST00000582717 GGA3-005 protein_coding Homo_sapiens 0 241
ENST00000582821 GGA3-009 retained_intron Homo_sapiens 0.00000000000008 82
ENST00000584243 GGA3-015 nonsense_mediated_decay Homo_sapiens 0 191
ENST00000613421 GGA3-007 retained_intron Homo_sapiens 0 241
ENST00000621217 GGA3-008 nonsense_mediated_decay Homo_sapiens 1.4013e-45 189
ENST00000621870 GGA3-003 nonsense_mediated_decay Homo_sapiens 0 241

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