C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CASK-interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041684 Caskin2-001 ENSMUSG00000034471 10090 - 11:115799183-115813630 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041684 16.593±3.09 40.078±1.69 10.964±0.44 8.124±1.19 12.263±4.78 38.916±5.68 13.474±3.42 16.792±2.18 4.784±1.84 47.922±9.34 5.542±0.50 20.075±6.00 9.685±6.75 3.551±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007J0 CIL_0007J0_0002 CGP 11:115644045-115799366
CIL_0001FY CIL_0001FY_0002 CGP 11:115765433-115813639
CIL_0007IY CIL_0007IY_0002 CGP 11:115799183-115823094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130451 CASKIN2 (4 of 4)-201 protein_coding Danio_rerio 0 342
ENST00000321617 CASKIN2-001 protein_coding Homo_sapiens 0 4054
ENST00000433559 CASKIN2-003 protein_coding Homo_sapiens 0 3666
ENST00000580021 CASKIN2-007 retained_intron Homo_sapiens 0 392
ENST00000581870 CASKIN2-002 protein_coding Homo_sapiens 0 1467
ENST00000583246 CASKIN2-006 retained_intron Homo_sapiens 0 366
ENST00000583258 CASKIN2-005 retained_intron Homo_sapiens 0 501

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