C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDP-mannose 4, 6-dehydratase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041859 Gmds-001 ENSMUSG00000038372 10090 - 13:31819579-32338712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041859
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041859 6.058±1.04 3.972±1.70 7.155±1.91 7.832±2.02 4.347±1.31 99.671±11.43 1.733±0.17 6.910±0.84 3.080±2.02 5.901±1.49 0.658±0.13 8.549±2.96 11.190±2.98 2.645±0.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SP CIL_0005SP_0003 CGP 13:31806691-32338712
CIL_0005MS CIL_0005MS_0002 CGP 13:31819579-32783954

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0007219 ISS Notch signaling pathway
GO:0008446 ISS GDP-mannose 4,6-dehydratase activity
GO:0019673 ISS GDP-mannose metabolic process
GO:0042351 ISS 'de novo' GDP-L-fucose biosynthetic process
GO:0070062 IEA extracellular vesicular exosome
GO:0070401 ISS NADP+ binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380805 GMDS-002 retained_intron Homo_sapiens 0 518
ENST00000380815 GMDS-001 protein_coding Homo_sapiens 0 1452
ENST00000530075 GMDS-009 retained_intron Homo_sapiens 0 353
ENST00000530459 GMDS-008 processed_transcript Homo_sapiens 0 606
ENST00000530927 GMDS-007 protein_coding Homo_sapiens 0 1358
ENST00000531690 GMDS-006 processed_transcript Homo_sapiens 0 691
ENST00000533279 GMDS-010 processed_transcript Homo_sapiens 2e-18 97

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