C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042824 Herc1-001 ENSMUSG00000038664 10090 + 9:66350526-66508775 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042824
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042824 4.427±1.37 4.341±1.43 3.915±1.59 15.066±1.25 5.191±1.44 4.223±1.84 3.588±0.91 3.688±1.45 3.941±2.26 4.530±2.24 2.628±0.61 9.508±2.79 3.574±1.74 5.532±3.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005575 ND cellular_component
GO:0010507 IMP negative regulation of autophagy
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0021702 IMP cerebellar Purkinje cell differentiation
GO:0031175 IMP neuron projection development
GO:0050885 IMP neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109030 HERC1-201 protein_coding Danio_rerio 0 2069
ENST00000443617 HERC1-001 protein_coding Homo_sapiens 0 20830
ENST00000558324 HERC1-012 nonsense_mediated_decay Homo_sapiens 0 536
ENST00000558532 HERC1-005 protein_coding Homo_sapiens 0 782
ENST00000559715 HERC1-014 protein_coding Homo_sapiens 0 604
ENST00000559886 HERC1-002 retained_intron Homo_sapiens 0 2819
ENST00000559996 HERC1-013 retained_intron Homo_sapiens 0 562
ENST00000560462 HERC1-015 protein_coding Homo_sapiens 0 686
ENST00000560519 HERC1-006 retained_intron Homo_sapiens 0 776
ENST00000560897 HERC1-008 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000560983 HERC1-007 retained_intron Homo_sapiens 0 499
ENST00000561348 HERC1-011 retained_intron Homo_sapiens 0 706
ENST00000561359 HERC1-010 nonsense_mediated_decay Homo_sapiens 9.80909e-45 183
ENST00000561400 HERC1-003 protein_coding Homo_sapiens 0 1437
ENST00000561436 HERC1-009 retained_intron Homo_sapiens 0 686

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