C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 small nuclear RNA auxiliary factor 1-like 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043273 U2af1l4-001 ENSMUSG00000078765 10090 + 7:30563321-30565365 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000043273
Transcript ID Adipose Bladder Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000043273 8.351±3.43 8.857±0.53 6.460±2.01 5.745±1.18 4.030±0.66 8.348±0.86 6.013±0.00 5.401±0.00 11.929±0.28

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292879 U2AF1L4-005 protein_coding Homo_sapiens 0 252
ENST00000378975 U2AF1L4-006 protein_coding Homo_sapiens 0 531
ENST00000412391 U2AF1L4-201 protein_coding Homo_sapiens 0 920
ENST00000585554 U2AF1L4-008 retained_intron Homo_sapiens 0 252
ENST00000585771 U2AF1L4-017 retained_intron Homo_sapiens 1e-24 117
ENST00000586476 U2AF1L4-001 retained_intron Homo_sapiens 0 252
ENST00000587708 PSENEN-001 protein_coding Homo_sapiens 4e-19 100
ENST00000587886 U2AF1L4-015 protein_coding Homo_sapiens 2e-24 115
ENST00000587987 U2AF1L4-007 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000588100 U2AF1L4-014 processed_transcript Homo_sapiens 4e-19 99
ENST00000588892 U2AF1L4-003 retained_intron Homo_sapiens 0 228
ENST00000588980 U2AF1L4-004 retained_intron Homo_sapiens 0 226
ENST00000589429 U2AF1L4-011 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000589807 AD000671.6-001 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000590135 U2AF1L4-009 retained_intron Homo_sapiens 2e-21 108
ENST00000591057 U2AF1L4-012 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000591084 U2AF1L4-010 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000591855 U2AF1L4-013 retained_intron Homo_sapiens 0 531
ENST00000592913 U2AF1L4-002 retained_intron Homo_sapiens 8e-24 115
ENST00000594792 U2AF1L4-019 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000600296 U2AF1L4-021 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000601236 U2AF1L4-020 nonsense_mediated_decay Homo_sapiens 0 337

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