C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility (minor) HA-1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043311 Hmha1-004 ENSMUSG00000035697 10090 + 10:80019653-80031468 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043311 6.890±4.27 1.513±0.31 4.552±0.48 0.464±0.04 11.436±2.63 3.167±0.37 0.940±0.56 1.520±0.07 2.520±1.42 13.026±1.13 0.476±0.39 5.642±2.33 1.598±0.36 0.857±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0000HU CIL_0000HU_0002 CGP 10:79996494-80031472
CIL_00030S CIL_00030S_0002 CGP 10:80016653-80039795

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005096 IEA GTPase activator activity
GO:0005622 IEA intracellular
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313093 HMHA1-002 protein_coding Homo_sapiens 0 2156
ENST00000539243 HMHA1-001 protein_coding Homo_sapiens 0 2156
ENST00000543365 HMHA1-004 protein_coding Homo_sapiens 0 2185
ENST00000586033 HMHA1-014 retained_intron Homo_sapiens 0 424
ENST00000586866 HMHA1-007 protein_coding Homo_sapiens 0 2156
ENST00000587602 HMHA1-006 nonsense_mediated_decay Homo_sapiens 0 1240
ENST00000590214 HMHA1-003 protein_coding Homo_sapiens 0 2156

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