C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRAF3 interacting protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043550 Traf3ip3-001 ENSMUSG00000037318 10090 - 1:193175506-193201546 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverMuscleENSMUST00000043550
Transcript ID Adipose Adrenal Brain Breast Heart Liver Muscle
ENSMUST00000043550 0.418±0.01 0.309±0.00 0.605±0.00 4.970±0.48 0.567±0.00 3.350±1.70 1.001±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZL CIL_0007ZL_0002 VISTA 1:192841048-193441723
CIL_00089N CIL_00089N_0002 VISTA 1:193149329-193750185

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294811 C1orf74-001 protein_coding Homo_sapiens 1e-28 134
ENST00000367023 TRAF3IP3-006 protein_coding Homo_sapiens 0 660
ENST00000367024 TRAF3IP3-002 protein_coding Homo_sapiens 0 1229
ENST00000367025 TRAF3IP3-001 protein_coding Homo_sapiens 0 1229
ENST00000367026 TRAF3IP3-012 protein_coding Homo_sapiens 0 1027
ENST00000400959 TRAF3IP3-011 protein_coding Homo_sapiens 0 843
ENST00000460314 TRAF3IP3-004 retained_intron Homo_sapiens 6e-29 134
ENST00000467830 TRAF3IP3-005 processed_transcript Homo_sapiens 1e-25 121
ENST00000471368 TRAF3IP3-008 nonsense_mediated_decay Homo_sapiens 1e-29 134
ENST00000474496 TRAF3IP3-016 retained_intron Homo_sapiens 0 270
ENST00000476050 TRAF3IP3-003 retained_intron Homo_sapiens 0 270
ENST00000477431 TRAF3IP3-017 protein_coding Homo_sapiens 0 540
ENST00000478359 TRAF3IP3-013 nonsense_mediated_decay Homo_sapiens 0 889
ENST00000479796 TRAF3IP3-007 protein_coding Homo_sapiens 4e-34 148
ENST00000487271 TRAF3IP3-015 protein_coding Homo_sapiens 0 394

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