C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043577 Cldn5-201 ENSMUSG00000041378 10090 + 16:18776847-18778260 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043577
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043577 95.102±57.47 44.317±10.90 23.638±5.19 42.123±5.26 44.548±19.08 11.188±1.09 15.963±1.20 15.622±1.56 6.195±2.26 392.928±32.39 5.721±2.13 58.599±17.01 15.762±5.23 4.956±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0002 VISTA 16:18254168-18857637
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684
CIL_0000RL CIL_0000RL_0002 CGP 16:18621811-18778260
CIL_0000RN CIL_0000RN_0002 CGP 16:18776847-18811987

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0005923 IDA tight junction
GO:0016021 NAS integral component of membrane
GO:0016337 IC single organismal cell-cell adhesion
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0033270 IEA paranode region of axon
GO:0042552 IEA myelination
GO:0042802 ISS identical protein binding
GO:0043220 IEA Schmidt-Lanterman incisure
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064197 cldn5a-001 protein_coding Danio_rerio 0.000000003 68
ENST00000403084 CLDN5-003 protein_coding Homo_sapiens 0 771
ENST00000406028 CLDN5-001 protein_coding Homo_sapiens 0 771
ENST00000413119 CLDN5-002 protein_coding Homo_sapiens 0 771
ENST00000618236 CLDN5-004 protein_coding Homo_sapiens 0 771

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