C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043624 Med13-001 ENSMUSG00000034297 10090 - 11:86267033-86357602 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043624
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043624 5.991±3.26 4.549±1.11 4.229±1.07 5.939±1.96 8.004±2.72 4.802±1.02 3.375±0.42 6.174±1.48 3.310±1.45 8.672±1.61 3.523±0.73 6.075±2.85 8.023±2.30 4.305±1.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JV CIL_0007JV_0002 UCNEbase 11:85613059-86270571
CIL_00096P CIL_00096P_0002 VISTA 11:85867092-86468104
CIL_00056C CIL_00056C_0003 CGP 11:86210681-86357602
CIL_00039N CIL_00039N_0002 CGP 11:86267033-86499025

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003712 IEA transcription cofactor activity
GO:0003713 IEA transcription coactivator activity
GO:0004872 IEA receptor activity
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006367 IEA transcription initiation from RNA polymerase II promoter
GO:0016020 IEA membrane
GO:0016592 IDA mediator complex
GO:0030518 IEA intracellular steroid hormone receptor signaling pathway
GO:0030521 IEA androgen receptor signaling pathway
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046966 IEA thyroid hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088852 med13a-201 protein_coding Danio_rerio 0 193
ENSDART00000134491 med13a-001 protein_coding Danio_rerio 0 193
ENST00000397786 MED13-001 protein_coding Homo_sapiens 0 10970
ENST00000428342 MED13P1-001 processed_pseudogene Homo_sapiens 0 226
ENST00000520621 CTB-23I7.2-001 processed_pseudogene Homo_sapiens 0 697
ENST00000578132 MED13-005 retained_intron Homo_sapiens 0 658
ENST00000580896 MED13-004 processed_transcript Homo_sapiens 7.00649e-44 180
ENST00000581994 MED13-002 retained_intron Homo_sapiens 0 237
ENST00000582786 MED13-006 retained_intron Homo_sapiens 0 385
ENST00000583958 MED13-003 protein_coding Homo_sapiens 0 1354

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