C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRCA1 interacting protein C-terminal helicase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044423 Brip1-001 ENSMUSG00000034329 10090 - 11:86058138-86201193 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044423
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044423 0.270±0.02 0.048±0.02 0.205±0.00 0.386±0.27 0.150±0.07 0.215±0.08 0.098±0.02 0.281±0.10 1.185±1.00 0.099±0.03 0.016±0.01 0.421±0.23 0.870±0.55 0.430±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JV CIL_0007JV_0002 UCNEbase 11:85613059-86270571
CIL_00096P CIL_00096P_0002 VISTA 11:85867092-86468104
CIL_0000LR CIL_0000LR_0002 CGP 11:85886422-86201193
CIL_0006ZY CIL_0006ZY_0002 CGP 11:86058138-86257575

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006281 IEA DNA repair
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0031965 IEA nuclear membrane
GO:0032508 IEA DNA duplex unwinding
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259008 BRIP1-001 protein_coding Homo_sapiens 0 2606
ENST00000577598 BRIP1-002 protein_coding Homo_sapiens 0 2599
ENST00000577913 BRIP1-003 protein_coding Homo_sapiens 0 237
ENST00000579028 BRIP1-005 nonsense_mediated_decay Homo_sapiens 0 551
ENST00000583837 BRIP1-004 processed_transcript Homo_sapiens 0 230
ENST00000584322 BRIP1-006 protein_coding Homo_sapiens 0 399

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