C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulating synaptic membrane exocytosis 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044734 Rims4-001 ENSMUSG00000035226 10090 - 2:163859751-163918683 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044734
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044734 1.017±0.48 24.376±2.77 0.024±0.00 5.945±4.04 0.841±0.33 1.608±0.15 0.271±0.04 0.075±0.04 0.163±0.26 0.079±0.02 0.528±0.09 10.623±7.00 0.134±0.16 0.625±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R9 CIL_0007R9_0002 VISTA 2:163385776-163987192
CIL_0003UW CIL_0003UW_0002 CGP 2:163853651-163918683
CIL_0006IP CIL_0006IP_0003 CGP 2:163859751-164018588

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006836 IEA neurotransmitter transport
GO:0006887 IEA exocytosis
GO:0030054 IEA cell junction
GO:0042391 IDA regulation of membrane potential
GO:0044325 IDA ion channel binding
GO:0097060 IDA synaptic membrane
GO:2000300 ISS regulation of synaptic vesicle exocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082821 RIMS4-001 protein_coding Danio_rerio 0 466
ENST00000372851 RIMS4-002 protein_coding Homo_sapiens 0 2189
ENST00000372861 KCNK15-001 protein_coding Homo_sapiens 0.00001 57
ENST00000541604 RIMS4-003 protein_coding Homo_sapiens 0 1411

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