C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil serine rich 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045522 Ccser1-201 ENSMUSG00000039578 10090 + 6:61310855-62380267 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverMuscleTestisENSMUST00000045522
Transcript ID Brain Breast Heart Liver Muscle Testis
ENSMUST00000045522 2.969±1.76 0.249±0.07 0.085±0.03 0.025±0.01 0.054±0.04 0.060±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083N CIL_00083N_0002 VISTA 6:60741566-61344404
CIL_0000KN CIL_0000KN_0002 CGP 6:60924976-62382865
CIL_0001RV CIL_0001RV_0003 CGP 6:61180324-64668282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000432775 CCSER1-002 protein_coding Homo_sapiens 0 1546
ENST00000502478 CCSER1-008 nonsense_mediated_decay Homo_sapiens 0 207
ENST00000505073 CCSER1-003 nonsense_mediated_decay Homo_sapiens 0 1493
ENST00000509176 CCSER1-001 protein_coding Homo_sapiens 0 2167
ENST00000513522 CCSER1-009 nonsense_mediated_decay Homo_sapiens 0 425

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