C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of cytokine signaling 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045540 Socs7-001 ENSMUSG00000038485 10090 + 11:97362551-97398542 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045540
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045540 1.084±0.78 4.252±1.38 0.797±0.35 9.462±4.59 2.857±1.17 2.707±1.26 1.939±0.70 2.294±0.67 0.526±0.37 3.911±0.59 4.537±0.83 6.586±2.98 1.146±0.40 34.801±13.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TL CIL_0000TL_0003 CGP 11:97332109-97398542
CIL_0000SJ CIL_0000SJ_0002 CGP 11:97362551-97502402

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0008286 IMP insulin receptor signaling pathway
GO:0009968 IEA negative regulation of signal transduction
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction
GO:0040008 IEA regulation of growth
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045444 IMP fat cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000612932 SOCS7-001 protein_coding Homo_sapiens 0 2527
ENST00000613678 SOCS7-002 protein_coding Homo_sapiens 0 1319
ENST00000615473 SOCS7-201 protein_coding Homo_sapiens 0 2617
ENST00000617360 SOCS7-003 retained_intron Homo_sapiens 0 1055
ENST00000617765 SOCS7-004 protein_coding Homo_sapiens 0 435

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