C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secretory carrier membrane protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045791 Scamp2-201 ENSMUSG00000040188 10090 + 9:57560944-57588797 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045791
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045791 40.149±9.87 48.494±0.79 27.158±2.29 12.693±7.82 49.946±5.70 113.365±25.54 14.899±2.01 71.729±6.53 14.161±1.29 42.914±2.81 16.512±1.30 52.880±18.17 19.111±9.31 57.139±12.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005794 IEA Golgi apparatus
GO:0015031 ISS protein transport
GO:0016021 ISS integral component of membrane
GO:0030133 IEA transport vesicle
GO:0032588 ISS trans-Golgi network membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0055038 ISS recycling endosome membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268099 SCAMP2-001 protein_coding Homo_sapiens 0 1301
ENST00000562363 SCAMP2-008 protein_coding Homo_sapiens 0 638
ENST00000563663 SCAMP2-004 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000563829 SCAMP2-005 retained_intron Homo_sapiens 0 907
ENST00000564529 SCAMP2-007 protein_coding Homo_sapiens 0 499
ENST00000565345 SCAMP2-009 protein_coding Homo_sapiens 0 815
ENST00000566480 SCAMP2-003 protein_coding Homo_sapiens 0 830
ENST00000566557 SCAMP2-011 retained_intron Homo_sapiens 0 496
ENST00000567638 SCAMP2-010 retained_intron Homo_sapiens 0 619
ENST00000569124 SCAMP2-006 retained_intron Homo_sapiens 0 207
ENST00000569251 SCAMP2-013 retained_intron Homo_sapiens 0 898
ENST00000569904 SCAMP2-012 nonsense_mediated_decay Homo_sapiens 0 830

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