C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prothymosin alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045897 Ptma-001 ENSMUSG00000026238 10090 + 1:86526726-86530712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045897
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045897 177.464±110.53 266.963±42.93 447.005±23.43 582.882±376.47 148.722±59.38 186.215±41.38 39.725±5.95 159.275±14.21 535.461±608.00 208.762±0.93 28.223±4.40 465.811±174.20 439.963±263.40 34.169±9.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0002 VISTA 1:86187174-86788752
CIL_0007WD CIL_0007WD_0002 VISTA 1:86187834-86792789
CIL_0007FJ CIL_0007FJ_0002 CGP 1:86426329-86530712
CIL_0007FM CIL_0007FM_0002 CGP 1:86526726-86582629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0042393 IDA histone binding
GO:0043486 IDA histone exchange

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341369 PTMA-002 protein_coding Homo_sapiens 0 1445
ENST00000397729 PTMAP8-001 processed_pseudogene Homo_sapiens 0 372
ENST00000409115 PTMA-001 protein_coding Homo_sapiens 0 1443
ENST00000409321 PTMA-012 protein_coding Homo_sapiens 0 667
ENST00000409683 PTMA-007 protein_coding Homo_sapiens 0 1033
ENST00000410064 PTMA-004 protein_coding Homo_sapiens 0 425
ENST00000411648 PTMAP1-001 processed_pseudogene Homo_sapiens 0 228
ENST00000412128 PTMA-008 protein_coding Homo_sapiens 0 876
ENST00000442851 PTMAP1-001 processed_pseudogene Homo_sapiens 0 233
ENST00000444251 PTMAP1-001 processed_pseudogene Homo_sapiens 0 228
ENST00000447774 PTMAP1-001 processed_pseudogene Homo_sapiens 0 228
ENST00000448874 PTMA-011 nonsense_mediated_decay Homo_sapiens 0 1147
ENST00000455552 PTMAP1-001 processed_pseudogene Homo_sapiens 0 228
ENST00000456700 PTMAP1-001 processed_pseudogene Homo_sapiens 0 228
ENST00000457022 PTMAP1-001 processed_pseudogene Homo_sapiens 0 228
ENST00000466801 PTMA-013 processed_transcript Homo_sapiens 0 532
ENST00000467816 PTMA-010 retained_intron Homo_sapiens 0 233
ENST00000468027 PTMA-006 retained_intron Homo_sapiens 0 523
ENST00000481928 PTMA-003 retained_intron Homo_sapiens 0 1125
ENST00000607242 PTMAP5-002 processed_transcript Homo_sapiens 0 1321
ENST00000612829 PTMA-201 protein_coding Homo_sapiens 0 1258

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