C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paralemmin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046945 Palm-201 ENSMUSG00000035863 10090 + 10:79793572-79820896 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046945
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046945 17.669±5.02 5.357±0.52 28.609±5.69 17.065±0.00 6.429±1.56 5.055±0.67 4.302±1.39 4.724±0.48 0.651±0.27 5.236±1.91 3.736±0.62 11.333±2.66 4.285±0.97 0.695±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0001F5 CIL_0001F5_0002 CGP 10:79781474-79820896
CIL_00008D CIL_00008D_0002 CGP 10:79793572-79830452

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007010 IDA cytoskeleton organization
GO:0007194 IDA negative regulation of adenylate cyclase activity
GO:0008104 IDA protein localization
GO:0008360 IDA regulation of cell shape
GO:0016323 IEA basolateral plasma membrane
GO:0016327 IEA apicolateral plasma membrane
GO:0030175 IDA filopodium
GO:0030424 IEA axon
GO:0030818 IDA negative regulation of cAMP biosynthetic process
GO:0031527 IEA filopodium membrane
GO:0031750 IPI D3 dopamine receptor binding
GO:0032590 IEA dendrite membrane
GO:0032591 IEA dendritic spine membrane
GO:0044309 IDA neuron spine
GO:0051491 IDA positive regulation of filopodium assembly
GO:0060074 IDA synapse maturation
GO:0060160 IEA negative regulation of dopamine receptor signaling pathway
GO:0060999 IDA positive regulation of dendritic spine development
GO:0071257 IDA cellular response to electrical stimulus
GO:0072661 IDA protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338448 PALM-001 protein_coding Homo_sapiens 0 917
ENST00000587513 PALM-005 processed_transcript Homo_sapiens 0 628
ENST00000592155 PALM-004 protein_coding Homo_sapiens 0 628
ENST00000593172 PALM-003 processed_transcript Homo_sapiens 0 667

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