C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 126
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047203 Rnf126-201 ENSMUSG00000035890 10090 - 10:79758515-79766952 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047203
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047203 28.493±2.87 43.101±5.79 16.712±6.61 30.518±10.57 36.826±1.72 41.806±6.65 13.336±3.18 31.828±4.31 23.148±8.09 29.280±0.55 24.169±3.40 48.267±22.79 39.797±18.26 349.199±148.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_00008H CIL_00008H_0002 CGP 10:79755119-79766952
CIL_0004VK CIL_0004VK_0002 CGP 10:79758515-79782630

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005154 IPI epidermal growth factor receptor binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006513 ISS protein monoubiquitination
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0032880 ISS regulation of protein localization
GO:0042059 ISS negative regulation of epidermal growth factor receptor signaling pathway
GO:0042127 ISS regulation of cell proliferation
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043162 ISS ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0061630 IDA ubiquitin protein ligase activity
GO:0070534 IDA protein K63-linked ubiquitination
GO:0070936 IDA protein K48-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292363 RNF126-001 protein_coding Homo_sapiens 0 1227
ENST00000567452 RNF126P1-002 processed_transcript Homo_sapiens 1e-18 99
ENST00000586749 RNF126-003 retained_intron Homo_sapiens 0 424
ENST00000589762 RNF126-008 protein_coding Homo_sapiens 0 580
ENST00000590885 RNF126-006 processed_transcript Homo_sapiens 0 739
ENST00000591394 RNF126-002 retained_intron Homo_sapiens 0 584
ENST00000592626 RNF126-004 retained_intron Homo_sapiens 0 244
ENST00000605891 RNF126-007 nonsense_mediated_decay Homo_sapiens 0 817
ENST00000606702 RNF126-005 protein_coding Homo_sapiens 0 289

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