C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047413 Mbd5-001 ENSMUSG00000036792 10090 + 2:49245969-49317069 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLiverLungOvaryTestisENSMUST00000047413
Transcript ID Adipose Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000047413 1.674±0.10 1.172±0.18 1.350±0.00 1.374±0.26 0.573±0.00 1.313±0.00 1.233±0.09 0.843±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MB CIL_0006MB_0002 CGP 2:48814109-48950277
CIL_0006MC CIL_0006MC_0002 CGP 2:48902824-49322284
CIL_000210 CIL_000210_0002 CGP 2:48949510-49551948

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0007399 IEA nervous system development
GO:0010369 IEA chromocenter
GO:0040014 IMP regulation of multicellular organism growth
GO:0042593 IMP glucose homeostasis
GO:0044708 IEA single-organism behavior
GO:0060399 IMP positive regulation of growth hormone receptor signaling pathway
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082954 mbd5-201 protein_coding Danio_rerio 5e-18 99
ENST00000404807 MBD5-004 protein_coding Homo_sapiens 0 8419
ENST00000407073 MBD5-001 protein_coding Homo_sapiens 0 4625
ENST00000416015 MBD5-005 protein_coding Homo_sapiens 0 4737
ENST00000496893 MBD5-003 retained_intron Homo_sapiens 0 2736

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