C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin alpha 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047614 Pcdha10-203 ENSMUSG00000007440 10090 + 18:37020230-37187657 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000047614
Transcript ID Adrenal Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000047614 0.344±0.04 8.318±1.48 0.086±0.02 0.019±0.01 0.018±0.00 0.017±0.01 0.008±0.00 0.089±0.03 0.023±0.00 3.515±1.51

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253807 PCDHAC1-001 protein_coding Homo_sapiens 0 3356
ENST00000289269 PCDHAC2-001 protein_coding Homo_sapiens 0 3362
ENST00000289272 PCDHA13-003 protein_coding Homo_sapiens 0 5373
ENST00000307360 PCDHA10-002 protein_coding Homo_sapiens 0 4300
ENST00000356878 PCDHA7-002 protein_coding Homo_sapiens 0 977
ENST00000378122 PCDHA9-002 protein_coding Homo_sapiens 0 492
ENST00000378123 PCDHA8-002 protein_coding Homo_sapiens 0 955
ENST00000378125 PCDHA4-201 protein_coding Homo_sapiens 0 1014
ENST00000378126 PCDHA6-003 protein_coding Homo_sapiens 0 952
ENST00000378132 PCDHA2-003 protein_coding Homo_sapiens 0 985
ENST00000378133 PCDHA1-003 protein_coding Homo_sapiens 0 1417
ENST00000394633 PCDHA1-001 protein_coding Homo_sapiens 0 948
ENST00000398631 PCDHA12-001 protein_coding Homo_sapiens 0 3354
ENST00000398640 PCDHA11-001 protein_coding Homo_sapiens 0 4329
ENST00000409494 PCDHA13-002 protein_coding Homo_sapiens 0 2420
ENST00000504120 PCDHA1-002 protein_coding Homo_sapiens 0 4706
ENST00000506751 PCDHA14-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 231
ENST00000506939 PCDHA10-001 protein_coding Homo_sapiens 0 2551
ENST00000512229 PCDHA4-002 protein_coding Homo_sapiens 0 1474
ENST00000520672 PCDHA2-002 protein_coding Homo_sapiens 0 985
ENST00000522353 PCDHA3-001 protein_coding Homo_sapiens 0 4313
ENST00000525929 PCDHA7-001 protein_coding Homo_sapiens 0 3354
ENST00000526136 PCDHA2-001 protein_coding Homo_sapiens 0 4285
ENST00000527624 PCDHA6-002 protein_coding Homo_sapiens 0 889
ENST00000529310 PCDHA6-001 protein_coding Homo_sapiens 0 4229
ENST00000529619 PCDHA5-002 protein_coding Homo_sapiens 0 1478
ENST00000529859 PCDHA5-001 protein_coding Homo_sapiens 0 3356
ENST00000530339 PCDHA4-001 protein_coding Homo_sapiens 0 4327
ENST00000531613 PCDHA8-001 protein_coding Homo_sapiens 0 4229
ENST00000532566 PCDHA3-002 protein_coding Homo_sapiens 0 1037
ENST00000532602 PCDHA9-001 protein_coding Homo_sapiens 0 4229
ENST00000562220 PCDHA10-003 protein_coding Homo_sapiens 0 481
ENST00000613593 PCDHA12-002 protein_coding Homo_sapiens 0 979
ENST00000613766 PCDHAC2-003 processed_transcript Homo_sapiens 0 673
ENST00000614258 PCDHA5-003 protein_coding Homo_sapiens 0 1417
ENST00000616325 PCDHA11-002 protein_coding Homo_sapiens 0 1044
ENST00000617408 PCDHA11-003 protein_coding Homo_sapiens 0 534
ENST00000617566 PCDHAC2-004 retained_intron Homo_sapiens 0 252
ENST00000617769 PCDHA13-001 protein_coding Homo_sapiens 0 2023
ENST00000618834 PCDHA4-003 protein_coding Homo_sapiens 0 1014

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